String Reconstruction from Substring Compositions

Series
ACO Colloquium
Time
Thursday, March 3, 2011 - 4:30pm for 1 hour (actually 50 minutes)
Location
Skiles 006
Speaker
Alon Orlitsky – Professor, UCSD – alon@ucsd.edu
Organizer
Prasad Tetali
Motivated by mass-spectrometry protein sequencing, we consider the simple problem of reconstructing a string from its substring compositions. Relating the question to the long-standing turnpike problem, polynomial factorization, and cyclotomic polynomials, we cleanly characterize the lengths of reconstructable strings and the structure of non-reconstructable ones. The talk is elementary and self contained and covers work with Jayadev Acharya, Hirakendu Das, Olgica Milenkovic, and Shengjun Pan.