Algebraic Systems Biology, Model Selection and Parameter Estimation

Algebra Seminar
Tuesday, May 31, 2016 - 11:05
1 hour (actually 50 minutes)
Skiles 006
San Jose State University
Systems biology focuses on modeling complex biological systems, such as metabolic and cell signaling networks.  These biological networks are modeled with polynomial dynamical systems. Analyzing these systems at steady-state results in algebraic varieties that live in high-dimensional spaces.  By understanding these varieties, we can provide insight into the behavior of the models. Furthermore, this algebro-geometric framework yields techniques for model selection and parameter estimation that can circumvent challenges such as limited or noisy data.  In this talk, we will introduce biochemical reaction networks and their resulting steady-state varieties.  In addition, we will discuss the questions asked by modelers and their corresponding geometric interpretation, particularly in regards to model selection and parameter estimation.